As described, any capital gain on the apartment is taxable if it was rented out all this time whether you were a resident of Canada or the US or both.
I will bet you $100 right now that you also filed a US 1040 Joint return with your husband showing you as a resident of the US all of this time. A big question I have is whether or not you reported the Canadian rented apartment on that 1040. I bet not from your email which is a 'very; serious US matter. An interesting part here is that if the apartment lost money, it would have meant less US tax payable.
Normally, you would have a very difficult time proving you are a resident of Canada as well and reversing the Section 216(4) tax returns filed. It can be done however if you had a Canadian Driver's licence (no US driver's licence) and a provincial medical card and can show from phone bills, hospital visits, etc., that you were closer connected to Canada then the US, it can be done for the rest of the years.
And, the good news is that it will not affect your US income tax filed with your husband BUT, in a strong pitch, could affect your US residency status if you have a green card which requires you to be in the US more than 183 days a year.
The problem with Section 216(4) returns is that losses can NOT be used against capital gains. A good accountant just about never files a section 216(4) return with a rental loss. The accountant should capitalize interest, taxes and repairs rather than use them as a deduction to create a loss which is lost against capital gains.
Worse news is that you created a deemed sale on the apartment when you moved back in and that has to be dealt with immediately if you moved back in 2009. If you did, you have a 2009 tax bill even though it was not sold.
You do not pay 50% of the difference. What you have to do is pay tax on 50% of the profit from when you moved out of it and rented it.
Depending upon the profit, that tax can be as low as 11% of the profit if the profit is less than $70,000. The absolute most tax you would pay is about 24% of the profit if you made over $300,000.
Hope this helps somewhat. You need to talk to someone who understands the rules and you need to understand them yourself. You are responding to outside events rather than doing what is proper under the act.
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